Differential expression per cluster
diffExpPerCluster(object, ...) # S4 method for SingleCellExperiment diffExpPerCluster(object, group, numerator, denominator, ...) # S4 method for Seurat diffExpPerCluster(object, group, numerator, denominator, ...)
object  Object. 

group 

numerator 

denominator 

...  Passthrough arguments to 
list
containing:
caller = "edgeR"
: DGELRT
.
caller = "DESeq2"
: DESeqResults
.
Cluster identity (ident
) must be defined in
colData()
for this function to work.
data(seurat) object < seurat group < factor(c("group1", "group2")) colData(object)$group < group suppressMessages( x < diffExpPerCluster( object = object, group = "group", numerator = "group2", denominator = "group1", caller = "edgeR" ) ) class(x)#> [1] "list"#> $`0` #> [1] "DGELRT" #> attr(,"package") #> [1] "edgeR" #> #> $`1` #> [1] "DGELRT" #> attr(,"package") #> [1] "edgeR" #> #> $`2` #> [1] "DGELRT" #> attr(,"package") #> [1] "edgeR" #>