Plot known markers

plotKnownMarkers(object, markers, ...)

# S4 method for SingleCellExperiment,KnownMarkers
plotKnownMarkers(object,
  markers, reduction = "UMAP", headerLevel = 2L, progress = FALSE,
  ...)

# S4 method for Seurat,KnownMarkers
plotKnownMarkers(object, markers,
  reduction = "UMAP", headerLevel = 2L, progress = FALSE, ...)

Arguments

object

Object.

markers

Object.

reduction

vector(1). Dimension reduction name or index position.

headerLevel

integer(1) (1-7). Markdown header level.

progress

logical(1). Show progress, using progress bars.

...

Passthrough arguments to plotMarker().

Value

Show graphical output. Invisibly return a ggplot list.

Note

Updated 2019-08-02.

Examples

data(Seurat, package = "acidtest") data(seuratKnownMarkers) ## Seurat ==== object <- Seurat markers <- seuratKnownMarkers plotKnownMarkers( object = object, markers = markers, reduction = "UMAP" )
#> #> #> ## Dendritic Cell {.tabset} #>
#> #> #> ## Macrophage {.tabset} #>