Seurat all markers example

seurat_all_markers

Format

An object of class SeuratMarkersPerCluster of dimension 106 x 76 x 37 x 8 x 8 x 8.

Examples

data(seurat_all_markers) seurat_all_markers
#> SeuratMarkersPerCluster of length 3 #> $cluster0 #> DataFrame with 106 rows and 8 columns #> cluster name avgLogFC pct1 pct2 #> <factor> <character> <numeric> <numeric> <numeric> #> 1 0 HLA-DPB1 -4.03469149237519 0.083 0.909 #> 2 0 HLA-DRB1 -3.76097185713251 0.083 0.864 #> 3 0 HLA-DPA1 -3.03212788647685 0.111 0.864 #> 4 0 HLA-DRA -2.95497408279157 0.417 0.909 #> 5 0 HLA-DRB5 -3.0196081283535 0.056 0.773 #> ... ... ... ... ... ... #> 102 0 RGS2 -1.26243136100614 0.167 0.5 #> 103 0 BLVRA -0.81334942250346 0.111 0.409 #> 104 0 CCL4 1.31023755110387 0.25 0.045 #> 105 0 VDAC3 0.859201714501344 0.361 0.136 #> 106 0 FCER1G -0.574662932295624 0.389 0.705 #> pvalue padj #> <numeric> <numeric> #> 1 9.57277798217116e-13 2.20173893589937e-10 #> 2 7.67312692302906e-12 1.76481919229668e-09 #> 3 3.67317230602123e-11 8.44829630384883e-09 #> 4 1.20911407661642e-10 2.78096237621776e-08 #> 5 9.54704945312061e-10 2.19582137421774e-07 #> ... ... ... #> 102 0.00775273895620089 1 #> 103 0.00883721022646868 1 #> 104 0.00952140975254573 1 #> 105 0.0097158131386374 1 #> 106 0.00984280930411559 1 #> ranges #> <GRanges> #> 1 HSCHR6_MHC_QBL:32972757-32984034:+ #> 2 6:32546546-32557625:- #> 3 HSCHR6_MHC_MCF:33065822-33082016:- #> 4 6:32407619-32412823:+ #> 5 6:32485120-32498064:- #> ... ... #> 102 1:192778169-192781403:+ #> 103 7:43798279-43846939:+ #> 104 17:34430983-34433014:+ #> 105 8:42249142-42263415:+ #> 106 1:161185024-161190489:+ #> #> ... #> <2 more elements>