Seurat known markers example

seurat_known_markers

Format

An object of class KnownMarkers with 16 rows and 10 columns.

Examples

data(seurat_known_markers) seurat_known_markers
#> KnownMarkers with 16 rows and 10 columns #> cluster name avgLogFC pct1 pct2 #> <factor> <character> <numeric> <numeric> <numeric> #> 1 0 HLA-DPB1 -4.03469149237519 0.083 0.909 #> 2 0 HLA-DRB1 -3.76097185713251 0.083 0.864 #> 3 0 HLA-DPA1 -3.03212788647685 0.111 0.864 #> 4 0 HLA-DRA -2.95497408279157 0.417 0.909 #> 5 0 HLA-DQB1 -3.00075456880158 0.028 0.659 #> ... ... ... ... ... ... #> 12 2 HLA-DRB1 1.65909049459023 0.842 0.41 #> 13 2 HLA-DRA 1.81241934529497 0.895 0.623 #> 14 2 HLA-DPA1 1.21232847541956 0.895 0.41 #> 15 2 HLA-DMB 2.07187123241627 0.632 0.213 #> 16 2 HLA-DQA1 1.7239908499937 0.632 0.23 #> pvalue padj geneID geneName #> <numeric> <numeric> <character> <factor> #> 1 9.57277798217116e-13 2.20173893589937e-10 ENSG00000215048 HLA-DPB1 #> 2 7.67312692302906e-12 1.76481919229668e-09 ENSG00000196126 HLA-DRB1 #> 3 3.67317230602123e-11 8.44829630384883e-09 ENSG00000168384 HLA-DPA1 #> 4 1.20911407661642e-10 2.78096237621776e-08 ENSG00000204287 HLA-DRA #> 5 3.03519842094915e-08 6.98095636818305e-06 ENSG00000179344 HLA-DQB1 #> ... ... ... ... ... #> 12 1.34188480345497e-06 0.000308633504794642 ENSG00000196126 HLA-DRB1 #> 13 4.61844548654605e-06 0.00106224246190559 ENSG00000204287 HLA-DRA #> 14 1.25859514370406e-05 0.00289476883051935 ENSG00000168384 HLA-DPA1 #> 15 2.54673813769652e-05 0.005857497716702 ENSG00000226264 HLA-DMB #> 16 6.67716322621332e-05 0.0153574754202906 ENSG00000196735 HLA-DQA1 #> cellType #> <factor> #> 1 Dendritic Cell #> 2 Dendritic Cell #> 3 Dendritic Cell #> 4 Dendritic Cell #> 5 Dendritic Cell #> ... ... #> 12 Dendritic Cell #> 13 Dendritic Cell #> 14 Dendritic Cell #> 15 Dendritic Cell #> 16 Dendritic Cell